{"id":399,"date":"2023-08-17T22:38:38","date_gmt":"2023-08-17T22:38:38","guid":{"rendered":"http:\/\/compsysbio.org\/?page_id=399"},"modified":"2023-08-23T17:20:19","modified_gmt":"2023-08-23T17:20:19","slug":"teaching","status":"publish","type":"page","link":"https:\/\/compsysbio.org\/index.php\/teaching\/","title":{"rendered":".\/teaching"},"content":{"rendered":"\n<div class=\"wp-block-columns alignwide is-layout-flex wp-container-core-columns-is-layout-28f84493 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<div class=\"wp-block-columns alignwide is-layout-flex wp-container-core-columns-is-layout-d2da2050 wp-block-columns-is-layout-flex\" style=\"margin-bottom:0\">\n<div class=\"wp-block-column has-text-color has-background has-link-color wp-elements-f304108e1262d2d8d782ad8591c1be22 is-layout-flow wp-block-column-is-layout-flow\" style=\"color:#000000;background-color:#ffe97d;padding-top:2em;padding-right:2em;padding-bottom:2em;padding-left:2em\">\n<h2 class=\"wp-block-heading\" id=\"single\" style=\"font-size:clamp(24.034px, 1.502rem + ((1vw - 3.2px) * 1.174), 40px);\"><strong>Undergraduate<\/strong><\/h2>\n\n\n\n<p><strong>BCH428H: Genomics of microbial communities in human health and beyond<\/strong><\/p>\n\n\n\n<hr class=\"wp-block-separator has-text-color has-css-opacity has-background is-style-wide\" style=\"background-color:#000000;color:#000000\"\/>\n\n\n\n<p>This 4th year undergraduate course, run with Dr. Alex Ensminger through the department of Biochemistry, focuses on the application of &#8216;omics technologies to study microbial genomics in the context of populations, as well as complex communities. The course features a mix of traditional lectures, online videos and reading and hands-on computer labs.<\/p>\n\n\n\n<div class=\"wp-block-buttons alignfull is-horizontal is-content-justification-center is-layout-flex wp-container-core-buttons-is-layout-03627597 wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button has-custom-width wp-block-button__width-100\"><a class=\"wp-block-button__link has-white-color has-text-color has-background no-border-radius wp-element-button\" href=\"https:\/\/biochemistry.utoronto.ca\/courses\/bch428h-genomics-microbial-communities\/\" style=\"background-color:#000000\">Course Link<\/a><\/div>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns alignwide is-layout-flex wp-container-core-columns-is-layout-d2da2050 wp-block-columns-is-layout-flex\" style=\"margin-bottom:0\">\n<div class=\"wp-block-column has-text-color has-background has-link-color wp-elements-d822a6a58aba46280319442e1f987a1f is-layout-flow wp-block-column-is-layout-flow\" style=\"color:#000000;background-color:#d1d1e1;padding-top:2em;padding-right:2em;padding-bottom:2em;padding-left:2em\">\n<h2 class=\"wp-block-heading\" id=\"family\" style=\"font-size:clamp(24.034px, 1.502rem + ((1vw - 3.2px) * 1.174), 40px);\"><strong>Graduate<\/strong><\/h2>\n\n\n\n<p><strong>MMG1327H: Microbiomes in Health and Disease<\/strong><\/p>\n\n\n\n<hr class=\"wp-block-separator has-css-opacity is-style-wide\"\/>\n\n\n\n<p>A six week topics course open to graduate students from the departments of Molecular Genetics and Biochemistry. This course examines how next generation sequencing technologies as well as systems modelling have been applied to the study of microbiomes. The course features a mixture of lectures and student-led journal presentations. A course assignment focuses on a dry-lab tutorial that takes the students through the process of analyzing a next generation sequence dataset generated from complex microbial communities<\/p>\n\n\n\n<div class=\"wp-block-buttons alignfull is-horizontal is-content-justification-center is-layout-flex wp-container-core-buttons-is-layout-03627597 wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button has-custom-width wp-block-button__width-100 is-style-fill\"><a class=\"wp-block-button__link has-white-color has-text-color has-background no-border-radius wp-element-button\" href=\"https:\/\/moleculargenetics.utoronto.ca\/sites\/default\/files\/inline-files\/MMG1327H_Microbiome_In_Health_And_Disease_1.pdf\" style=\"background-color:#000000\">Course Link<\/a><\/div>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns alignwide is-layout-flex wp-container-core-columns-is-layout-d2da2050 wp-block-columns-is-layout-flex\" style=\"margin-bottom:0\">\n<div class=\"wp-block-column has-text-color has-background has-link-color wp-elements-5cd0c67748517319dddf6d3466db7069 is-layout-flow wp-block-column-is-layout-flow\" style=\"color:#000000;background-color:#c0ebf1;padding-top:2em;padding-right:2em;padding-bottom:2em;padding-left:2em\">\n<h2 class=\"wp-block-heading\" id=\"patron\" style=\"font-size:clamp(24.034px, 1.502rem + ((1vw - 3.2px) * 1.174), 40px);\"><strong>National<\/strong><\/h2>\n\n\n\n<p><strong>CBW-IMPACTT Microbiome Analysis<\/strong><\/p>\n\n\n\n<hr class=\"wp-block-separator has-css-opacity is-style-wide\"\/>\n\n\n\n<p>This three day workshop has been offered annually since 2015, with the occasional break for global pandemics. With a cap of 30 students, this workshop combines formal lectures with hands on workshops to take users through the analysis of 16S rRNA surveys, metagenomics and metatranscriptomics. Dr. Parkinson leads the metatranscriptomics section. Lectures may be found on YouTube.<\/p>\n\n\n\n<div class=\"wp-block-buttons alignfull is-horizontal is-content-justification-center is-layout-flex wp-container-core-buttons-is-layout-03627597 wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button has-custom-width wp-block-button__width-100\"><a class=\"wp-block-button__link has-white-color has-text-color has-background no-border-radius wp-element-button\" href=\"https:\/\/bioinformatics.ca\/workshops-all\/2023-cbw-impactt-microbiome-analysis\/\" style=\"background-color:#000000\">Course Link<\/a><\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Undergraduate BCH428H: Genomics of microbial communities in human health and beyond This 4th year undergraduate course, run with Dr. Alex Ensminger through the department of Biochemistry, focuses on the application of &#8216;omics technologies to study microbial genomics in the context of populations, as well as complex communities. The course features a mix of traditional lectures, [&hellip;]<\/p>\n","protected":false},"author":5,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-399","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/compsysbio.org\/index.php\/wp-json\/wp\/v2\/pages\/399","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/compsysbio.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/compsysbio.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/compsysbio.org\/index.php\/wp-json\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/compsysbio.org\/index.php\/wp-json\/wp\/v2\/comments?post=399"}],"version-history":[{"count":6,"href":"https:\/\/compsysbio.org\/index.php\/wp-json\/wp\/v2\/pages\/399\/revisions"}],"predecessor-version":[{"id":418,"href":"https:\/\/compsysbio.org\/index.php\/wp-json\/wp\/v2\/pages\/399\/revisions\/418"}],"wp:attachment":[{"href":"https:\/\/compsysbio.org\/index.php\/wp-json\/wp\/v2\/media?parent=399"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}